veoibd-synapse-data-manager
latest
Project Description
Before we begin
Usage
A few of the Makefile Commands
Contributing
Credits
Change Log
Source Code Documentation
veoibd-synapse-data-manager
Docs
»
Index
Edit on GitHub
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
I
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
U
|
V
_
__eq__() (veoibd_synapse.dag_tools.SynNode method)
__getnewargs__() (veoibd_synapse.data.asset_intake.Row method)
__hash__() (veoibd_synapse.dag_tools.SynNode method)
__init__() (veoibd_synapse.cli.push.BaseInteraction method)
(veoibd_synapse.cli.push.Push method)
(veoibd_synapse.cli.push.PushInteraction method)
(veoibd_synapse.cli.syncdb.ProjectSubjectDatabase method)
(veoibd_synapse.cli.syncdb.SubjectDatabase method)
(veoibd_synapse.cli.syncdb.TeamSubjectDatabase method)
(veoibd_synapse.dag_tools.ProjectDAG method)
(veoibd_synapse.dag_tools.SynNode method)
(veoibd_synapse.errors.NotImplementedYet method)
(veoibd_synapse.interface.VEOProject method)
(veoibd_synapse.rules.SnakeRule method)
(veoibd_synapse.rules.SnakeRun method)
__ne__() (veoibd_synapse.dag_tools.SynNode method)
__new__() (veoibd_synapse.data.asset_intake.Row static method)
__repr__() (veoibd_synapse.data.asset_intake.Row method)
__str__() (veoibd_synapse.dag_tools.SynNode method)
_asdict() (veoibd_synapse.data.asset_intake.Row method)
_build_remote_entity_dag() (veoibd_synapse.cli.push.Push method)
(veoibd_synapse.interface.VEOProject method)
_create_interactions() (veoibd_synapse.cli.push.Push method)
_get_project_entity() (veoibd_synapse.interface.VEOProject method)
_get_remote_entity_dicts() (veoibd_synapse.cli.push.Push method)
(veoibd_synapse.interface.VEOProject method)
_import_config_dict() (veoibd_synapse.rules.SnakeRule method)
_make() (veoibd_synapse.data.asset_intake.Row class method)
_process_annotations() (veoibd_synapse.interface.VEOProject method)
_process_config_tree() (veoibd_synapse.interface.VEOProject method)
_process_local_paths() (veoibd_synapse.cli.push.PushInteraction method)
_process_push_config() (veoibd_synapse.cli.push.Push method)
_process_push_obj() (veoibd_synapse.cli.push.PushInteraction method)
_process_user() (veoibd_synapse.cli.push.Push method)
_Push__base_info() (veoibd_synapse.cli.push.Push method)
_replace() (veoibd_synapse.data.asset_intake.Row method)
A
add_file() (veoibd_synapse.cli.push.PushInteraction method)
apply_template() (in module veoibd_synapse.rules)
assay_type (veoibd_synapse.data.asset_intake.Row attribute)
attributes (veoibd_synapse.data.parsers.GTF.GTFLine attribute)
B
BaseInteraction (class in veoibd_synapse.cli.push)
batch_code (veoibd_synapse.data.asset_intake.Row attribute)
build_asset_table() (in module veoibd_synapse.data.asset_intake)
build_project_dbs() (veoibd_synapse.cli.syncdb.TeamSubjectDatabase method)
bytes (veoibd_synapse.data.asset_intake.Row attribute)
C
check_children() (veoibd_synapse.dag_tools.ProjectDAG method)
chunk_md5() (in module veoibd_synapse.misc)
combine_project_dbs() (veoibd_synapse.cli.syncdb.TeamSubjectDatabase method)
D
directory (veoibd_synapse.data.asset_intake.Row attribute)
E
end (veoibd_synapse.data.parsers.GTF.GTFLine attribute)
execute() (veoibd_synapse.cli.push.Push method)
(veoibd_synapse.cli.push.PushInteraction method)
extract_subject_names() (in module veoibd_synapse.data.extract_subids.utils.bch)
F
feature (veoibd_synapse.data.parsers.GTF.GTFLine attribute)
file_name (veoibd_synapse.data.asset_intake.Row attribute)
file_type (veoibd_synapse.data.asset_intake.Row attribute)
follow_path_to_folder() (veoibd_synapse.dag_tools.ProjectDAG method)
frame (veoibd_synapse.data.parsers.GTF.GTFLine attribute)
G
get_db_files() (veoibd_synapse.cli.syncdb.ProjectSubjectDatabase method)
GTFLine (class in veoibd_synapse.data.parsers.GTF)
I
is_folder_named_x() (in module veoibd_synapse.dag_tools)
L
line_number (veoibd_synapse.data.parsers.GTF.GTFLine attribute)
load_csv() (in module veoibd_synapse.misc)
login() (veoibd_synapse.cli.push.Push method)
M
main() (in module veoibd_synapse.cli.push)
(in module veoibd_synapse.cli.syncdb)
make_class_masks() (in module veoibd_synapse.data.extract_subids.utils.bch)
N
nan_to_str() (in module veoibd_synapse.misc)
NoResult
NotImplementedYet
P
parse_gtf_file() (in module veoibd_synapse.data.parsers.GTF)
parse_gtf_line() (in module veoibd_synapse.data.parsers.GTF)
path_hash (veoibd_synapse.data.asset_intake.Row attribute)
pathify_assets() (in module veoibd_synapse.data.asset_intake)
pathify_by_key_ends() (in module veoibd_synapse.rules)
prepare_destination() (veoibd_synapse.cli.push.PushInteraction method)
process_config() (in module veoibd_synapse.misc)
process_r1() (in module veoibd_synapse.data.extract_subids.utils.bch)
ProjectDAG (class in veoibd_synapse.dag_tools)
ProjectSubjectDatabase (class in veoibd_synapse.cli.syncdb)
Push (class in veoibd_synapse.cli.push)
PushInteraction (class in veoibd_synapse.cli.push)
R
recode_dashed_alphas() (in module veoibd_synapse.data.extract_subids.utils.bch)
recode_dashed_dots() (in module veoibd_synapse.data.extract_subids.utils.bch)
recode_fam_letters() (in module veoibd_synapse.data.extract_subids.utils.bch)
recode_graph() (in module veoibd_synapse.rules)
recode_subject_names() (in module veoibd_synapse.data.extract_subids.utils.bch)
replace_config() (in module veoibd_synapse.cli.config)
retrieve_db_file_ids() (veoibd_synapse.cli.syncdb.ProjectSubjectDatabase method)
retrieve_team_project_ids() (veoibd_synapse.cli.syncdb.TeamSubjectDatabase method)
Row (class in veoibd_synapse.data.asset_intake)
S
score (veoibd_synapse.data.parsers.GTF.GTFLine attribute)
seqname (veoibd_synapse.data.parsers.GTF.GTFLine attribute)
setup_logging() (in module veoibd_synapse.cli.main)
SnakeRule (class in veoibd_synapse.rules)
SnakeRun (class in veoibd_synapse.rules)
source (veoibd_synapse.data.parsers.GTF.GTFLine attribute)
start (veoibd_synapse.data.parsers.GTF.GTFLine attribute)
store() (veoibd_synapse.dag_tools.SynNode method)
strand (veoibd_synapse.data.parsers.GTF.GTFLine attribute)
subject_from_regeneron1_fname() (in module veoibd_synapse.data.extract_subids.bch)
subject_id (veoibd_synapse.data.asset_intake.Row attribute)
SubjectDatabase (class in veoibd_synapse.cli.syncdb)
SynNode (class in veoibd_synapse.dag_tools)
T
TeamSubjectDatabase (class in veoibd_synapse.cli.syncdb)
test_dash_in() (in module veoibd_synapse.data.extract_subids.utils.bch)
test_ends_letter() (in module veoibd_synapse.data.extract_subids.utils.bch)
test_starts_letter() (in module veoibd_synapse.data.extract_subids.utils.bch)
translate_fam_letter() (in module veoibd_synapse.data.extract_subids.utils.bch)
U
update_configs() (in module veoibd_synapse.misc)
V
ValidationError
veoibd_synapse (module)
veoibd_synapse.cli (module)
veoibd_synapse.cli.config (module)
veoibd_synapse.cli.main (module)
veoibd_synapse.cli.pull (module)
veoibd_synapse.cli.push (module)
veoibd_synapse.cli.query (module)
veoibd_synapse.cli.syncdb (module)
veoibd_synapse.dag_tools (module)
veoibd_synapse.data (module)
veoibd_synapse.data.asset_intake (module)
veoibd_synapse.data.extract_subids (module)
veoibd_synapse.data.extract_subids.bch (module)
veoibd_synapse.data.extract_subids.utils (module)
veoibd_synapse.data.extract_subids.utils.bch (module)
veoibd_synapse.data.parsers (module)
veoibd_synapse.data.parsers.GTF (module)
veoibd_synapse.data.preprocessing (module)
veoibd_synapse.errors (module)
veoibd_synapse.interface (module)
veoibd_synapse.misc (module)
veoibd_synapse.rules (module)
veoibd_synapse.visualization (module)
VEOIBDSynapseError
VEOProject (class in veoibd_synapse.interface)
Read the Docs
v: latest
Versions
latest
master
develop
Downloads
htmlzip
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.