Source code for veoibd_synapse.data.extract_subids.bch

#!/usr/bin/env python
"""Provide code to extract subject ID out of various forms used at BCH."""

# Imports
from logzero import logger as log

import veoibd_synapse.errors as e

from .utils.bch import process_r1

# Metadata
__author__ = "Gus Dunn"
__email__ = "w.gus.dunn@gmail.com"


# Functions
[docs]def subject_from_regeneron1_fname(fname):
    """Parse a file name from the REGENERON1 data batch to as close to a subject_id as possible.

    Args:
        fname (``str``): a file name.

    Returns:
        ``str``
    """
    # return fname.split('_')[1].rstrip('P').rstrip('M').rstrip('D').rstrip('F')
    return fname.split('_')[1].replace('-', '.')